A PDF version of the VIP user's manual is available here. You can also consult the Spatial analysis of vicariance's primer (it is already under development, but it already provide a methodological starting point).
The paper explaining Spatial Vicariance Analysis is in press for Cladistics. You can access the early view version using the DOI number: 10.1111/j.1096-0031.2011.00353.x. You can write me (jsalarias at csnat.unt.edu.ar) if you want a pdf copy!
The data set used for the analysis in the VIP manuscript: Turdus based on GBIF data (zipped).